Bioconductor Fcs

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flowcore fcs flow cytommetry matrix conversion

updated 5.4 years ago by Jake Wagner ▴ 310 • written 5.4 years ago by apurva • 0

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3.8k

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FCS flowframe flowcore flow cytometry

6.2 years ago vonskopnik ▴ 10

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1.5k

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Exprs Lapply FCS for loop flowcore

updated 7.0 years ago by Jiang, Mike ★ 1.3k • written 7.0 years ago by Wilson Yeo • 0

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1.2k

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fcs concentration experimentdata

7.5 years ago jurg.spaak • 0

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2.3k

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FCS flow cytometry bioconductor phenoData Loading Data

updated 7.8 years ago by SamGG ▴ 350 • written 7.8 years ago by smajor • 0

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1.2k

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FCS

9.2 years ago Nick England • 0

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2.8k

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flowcore fcs normalization flowstats

updated 9.3 years ago by Jiang, Mike ★ 1.3k • written 9.3 years ago by BenAbflack • 0

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

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