Bioconductor Fastmnn

Showing : fastmnn • reset

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564

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fastMNN SingleCellData BatchEffect batchelor

12 weeks ago José • 0

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1.4k

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scanpy scRNAseq fastmnn r

2.3 years ago Madiha • 0

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1.5k

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batchelor fastMNN scRNAseq

2.5 years ago • updated 2.4 years ago Guandong Shang ▴ 40

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2.5k

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scater batchelor scRNAseq fastMNN

updated 2.4 years ago by Aaron Lun ★ 28k • written 2.5 years ago by Guandong Shang ▴ 40

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1.3k

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fastmnn batchelor BatchEffect

3.3 years ago p.joshi ▴ 40

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1.4k

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fastmnn scater batchelor

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ATpoint ★ 4.6k

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738

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fastMNN Interpretation

4.6 years ago mloza ▴ 10

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1.3k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.8 years ago by Aaron Lun ★ 28k • written 5.4 years ago by firestar ▴ 20

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1.7k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by tobi • 0

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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