Bioconductor Fastmnn

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473

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fastMNN SingleCellData BatchEffect batchelor

8 weeks ago • updated 7 weeks ago José • 0

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1.4k

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scanpy scRNAseq fastmnn r

2.2 years ago Madiha • 0

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1.5k

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batchelor fastMNN scRNAseq

2.4 years ago Guandong Shang ▴ 40

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2.5k

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scater batchelor scRNAseq fastMNN

updated 2.4 years ago by Aaron Lun ★ 28k • written 2.4 years ago by Guandong Shang ▴ 40

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1.3k

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fastmnn batchelor BatchEffect

3.2 years ago p.joshi ▴ 40

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1.4k

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fastmnn scater batchelor

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by ATpoint ★ 4.6k

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719

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fastMNN Interpretation

4.5 years ago mloza ▴ 10

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1.3k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.7 years ago by Aaron Lun ★ 28k • written 5.3 years ago by firestar ▴ 20

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1.6k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

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Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k