Bioconductor Fastmnn

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399

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fastMNN SingleCellData BatchEffect batchelor

24 days ago • updated 22 days ago José • 0

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1.3k

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scanpy scRNAseq fastmnn r

2.1 years ago Madiha • 0

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1.4k

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batchelor fastMNN scRNAseq

2.3 years ago Guandong Shang ▴ 40

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2.4k

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scater batchelor scRNAseq fastMNN

updated 2.3 years ago by Aaron Lun ★ 28k • written 2.3 years ago by Guandong Shang ▴ 40

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1.2k

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fastmnn batchelor BatchEffect

3.1 years ago p.joshi ▴ 40

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1.4k

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fastmnn scater batchelor

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by ATpoint ★ 4.5k

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700

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fastMNN Interpretation

4.4 years ago mloza ▴ 10

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1.2k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.6 years ago by Aaron Lun ★ 28k • written 5.2 years ago by rmf ▴ 20

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1.6k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20