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fastMNN
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844
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
6 months ago
José
• 0
0
votes
3
replies
1.5k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
2.6 years ago
Madiha
• 0
4
votes
2
replies
1.6k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
2.7 years ago
Guandong Shang
▴ 40
0
votes
4
replies
2.7k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 2.7 years ago by
Aaron Lun
★ 28k • written 2.7 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.4k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
3.6 years ago
p.joshi
▴ 40
3
votes
1
reply
1.6k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
ATpoint
★ 4.8k
0
votes
0
replies
810
views
fastMNN reconstructed matrix
fastMNN
Interpretation
4.9 years ago
mloza
▴ 10
2
votes
1
reply
1.4k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
firestar
▴ 20
1
vote
2
replies
1.9k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
sorjuelal
• 0
1
vote
2
replies
1.7k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
tobi
• 0
10 results • Page
1 of 1
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Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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