Bioconductor FastMNN

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591

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fastMNN SingleCellData BatchEffect batchelor

3 months ago José • 0

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1.4k

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scanpy scRNAseq fastmnn r

2.3 years ago Madiha • 0

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1.5k

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batchelor fastMNN scRNAseq

2.5 years ago Guandong Shang ▴ 40

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2.5k

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scater batchelor scRNAseq fastMNN

updated 2.5 years ago by Aaron Lun ★ 28k • written 2.5 years ago by Guandong Shang ▴ 40

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1.3k

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fastmnn batchelor BatchEffect

3.3 years ago p.joshi ▴ 40

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1.4k

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fastmnn scater batchelor

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ATpoint ★ 4.6k

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748

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fastMNN Interpretation

4.6 years ago mloza ▴ 10

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1.3k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.8 years ago by Aaron Lun ★ 28k • written 5.4 years ago by firestar ▴ 20

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1.7k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0