Bioconductor FactomineR

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Biplot FactoMineR proteomics PCAtools ellipse

updated 24 months ago by Kevin Blighe ★ 4.0k • written 24 months ago by M Tuhin • 0

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clustering r fpc FactoMineR

5.4 years ago anahochmanova • 0

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deseq2 factominer PCA

updated 8.5 years ago by Ryan C. Thompson ★ 7.9k • written 8.5 years ago by sebastiano.curreli • 0

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software error factomineR bioclite

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by dany_wm44 • 0

4 results • Page 1 of 1

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Answer: No preprocessing allowed for EPICv2 with DMRcate by James W. MacDonald 67k

Have you read the [vignette that describes how to process the EPICv2 arrays][1]? Also the [NEWS file that tells you what changes have been …

Comment: How do I fix an odd voom plot in a combined dataset? by James W. MacDonald 67k

It looks more as you might expect, although it doesn't appear that you are filtering many of the low expressing genes out. Normally you sho…

Comment: Package `not available for Bioconductor version '3.20'` when it should be by Levi Waldron ★ 1.1k

Thanks, @mike-smith . I'll let the maintainer @bhaibeka know.

Answer: Package `not available for Bioconductor version '3.20'` when it should be by Mike Smith ★ 6.6k

Copy/paste of a similar answer I gave in the past - hopefully I updated all the package names. TL;DR The **genefu** package is failing to …

Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

So I changed it to ~0 + group (with the same plot), but I still don't know if it's good or what to fix if not.

Votes

Answer: Package `not available for Bioconductor version '3.20'` when it should be

Comment: How do I fix an odd voom plot in a combined dataset?

Comment: Theoretical WGCNA Question

Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a

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Popular Question to Levi Waldron ★ 1.1k

Scholar to Michael Love 43k