Showing : expresiondataset • reset
0
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5
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2.1k
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collect an expression dataset
limma CEL GEO affydata expresiondataset
updated 9.1 years ago by ★ 3.4k • written 9.1 years ago by • 0
0
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1
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3.3k
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Excluding columns of phenoData of ExpressionSet Data in R
microarray biobase expresiondataset r
9.3 years ago floodking • 0
1
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2
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2.5k
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Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine expresiondataset insilicomerging
9.4 years ago alakatos ▴ 130
5
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9
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3.5k
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Merge different datasets regarding a common number of DE genes in R
bioconductor expresiondataset affymetrixchip differential gene expression
9.8 years ago svlachavas ▴ 840
1
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4
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8.8k
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Error in PCA analysis and with ggbiplot function
bioconductor pca ggbiplot expresiondataset
updated 9.9 years ago by 67k • written 9.9 years ago by ▴ 840
5 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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