Bioconductor ExomeCopy

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578

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exomeCopy

updated 2.1 years ago by Michael Love 42k • written 2.1 years ago by joel.wallenius • 0

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683

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exomeCopy

updated 2.1 years ago by Michael Love 42k • written 2.1 years ago by ef.kafantari • 0

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600

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exomeCopy CNV WES

3.2 years ago Cheng • 0

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741

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exomeCopy

updated 5.0 years ago by Michael Love 42k • written 5.0 years ago by kkyung412 • 0

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803

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exomecopy

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by chiara.rigobello • 0

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1.1k

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exomecopy cnv

6.5 years ago ramakrishnas • 0

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1.0k

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exomecopy

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by sruddy17 • 0

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1.3k

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cnv exomecopy

updated 8.6 years ago by Michael Love 42k • written 8.6 years ago by cafelumiere12 ▴ 20

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1.3k

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exomecopy exon array analysis CODEX

9.2 years ago kaushal Raj Chaudhary ▴ 10

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1.5k

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exomeCopy exomeCopy

updated 11.2 years ago by Michael Love 42k • written 11.2 years ago by Kevin Lee ▴ 40

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947

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exomeCopy exomeCopy

updated 11.2 years ago by Michael Love 42k • written 11.2 years ago by Guru Ananda ▴ 10

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938

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Sequencing exomeCopy Sequencing exomeCopy

11.5 years ago love ▴ 150

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1.1k

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Sequencing exomeCopy Sequencing exomeCopy

11.5 years ago Guest User ★ 13k

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2.5k

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exomeCopy exomeCopy

updated 11.8 years ago by love ▴ 150 • written 11.8 years ago by Lescai, Francesco ▴ 380

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2.7k

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IRanges exomeCopy IRanges exomeCopy

updated 11.9 years ago by love ▴ 150 • written 11.9 years ago by Lescai, Francesco ▴ 380

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1.1k

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exomeCopy exomeCopy

updated 12.0 years ago by Martin Morgan 25k • written 12.0 years ago by Lescai, Francesco ▴ 380

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1.3k

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exomeCopy exomeCopy

updated 12.2 years ago by love ▴ 150 • written 12.2 years ago by Dan Spiegelman ▴ 10

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919

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exomeCopy exomeCopy

12.3 years ago love ▴ 150

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

Votes

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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