Showing : euclidean sample distance • reset
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Difference between heatmap using Euclidian distance and Poisson distance
deseq2 euclidean sample distance rnaseq
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 20
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Sample not clustering as expected in DESeq2
deseq2 Euclidean sample distance
7.6 years ago gkuffel ▴ 10
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Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Success k = tximport(file = m,type = 'oarfish', txOut = TRUE, tx2gene = tx2gene) Failure y <…
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k
hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.
Answer: Problems with oarfish + tximport + swish by Michael Love 43k
> This is fine Did tximeta() print that a matching transcriptome was found?
Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k
> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …
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Answer: Limma Interaction Effect with Covariates
Comment: DESeq2 for single cell pseudobulk processing
C: Limma: how to get same output as topTable but for all the genes ?
A: Processing agilent data by limma
A: Linear regression in DESeq2
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