Showing : ercc • reset
1
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1000
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Incorporating RUVg results into ImpulseDE2 model
ImpulseDE2 ImpulseDE ERCC RUVSeq
3.2 years ago • updated 3.1 years ago Mallory ▴ 10
3
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2
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3.3k
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Using the ERCC spike as a normalization factor for a custom algorithm
ERCC rna-seq edgeR tmm normalised values
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
27
votes
7
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16k
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Usability of ERCC spike-ins in standard RNAseq experiments
RNAseq deseq2 ercc
updated 8.2 years ago by ★ 3.8k • written 8.2 years ago by ▴ 30
16
votes
5
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8.0k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
limma voom deseq normalization ercc
updated 9.1 years ago by 52k • written 9.1 years ago by ▴ 120
8
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5
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5.6k
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edgeR and Normalization of RNAseq data using ERCC controls
edger ercc
10.1 years ago John ▴ 10
9
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4
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3.1k
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
10.1 years ago Wei Shi ★ 3.6k
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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