Bioconductor Ercc

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1.1k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.5 years ago • updated 3.4 years ago Mallory ▴ 10

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3.7k

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ERCC rna-seq edgeR tmm normalised values

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by what_theheck24 • 0

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16k

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RNAseq deseq2 ercc

updated 8.5 years ago by Simon Anders ★ 3.8k • written 8.5 years ago by mbeckste ▴ 30

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8.2k

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limma voom deseq normalization ercc

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by komal.rathi ▴ 120

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5.8k

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edger ercc

10.4 years ago John ▴ 10

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3.2k

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seqc rsubread featurecounts subjunc ercc News

10.4 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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