Bioconductor Epicv2

Showing : epicv2 • reset

vote

replies

1.2k

views

EPICv2 EPICv2manifest

5 weeks ago • updated 4 weeks ago Joshua Llano • 0

votes

replies

3.1k

views

EpicV2 ChAMPdata

updated 5 months ago by icecreamlover • 0 • written 6 months ago by nurkenber • 0

vote

replies

3.5k

views

ChAMP EPICv2

updated 6 months ago by Ricky • 0 • written 22 months ago by medha.suman • 0

votes

replies

311

views

EpicV2 DMRcate

6 months ago kitzhu • 0

vote

replies

1.6k

views

sesame EPICv2manifest epicv2

10 months ago luca.s ▴ 50

votes

replies

1.1k

views

sesameData EPICv2 EPICv1

updated 6 months ago by zhouwanding ▴ 20 • written 10 months ago by archibold.mposhi • 0

votes

replies

925

views

limma DMRcate MethylationArray EPICV2

updated 11 months ago by Gordon Smyth 52k • written 12 months ago by Kim • 0

vote

replies

1.9k

views

DNAMethylation GO MethylationArray missMethyl EPICv2

14 months ago • updated 7 months ago s.malik • 0

votes

replies

2.0k

views

DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by rae.alshammari ▴ 20

votes

replies

3.0k

views

ChAMP EPICv2

updated 5 months ago by icecreamlover • 0 • written 15 months ago by ChunkyJones • 0

votes

replies

1.9k

views

sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 13 months ago by aldea85 • 0 • written 17 months ago by Courtney ▴ 10

vote

replies

3.0k

views

minfiDataEPIC EpicV2

updated 19 months ago by Zuguang Gu ▴ 290 • written 20 months ago by Izabela.ams ▴ 10

12 results • Page 1 of 1

Recent ...

Replies

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

Awards • All

Great Question to inzirio ▴ 10