Bioconductor Entrez gene identifiers

Showing : entrez gene identifiers • reset

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2.5k

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biomart entrez gene identifiers ensembl conversion

updated 6.1 years ago by Mike Smith ★ 6.6k • written 6.1 years ago by EdgeR_A_Poe ▴ 10

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2.8k

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biomart ensembl entrez gene identifiers

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by rina ▴ 30

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14k

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org.hs.eg.db entrez gene identifiers genesymbols

updated 6.8 years ago by mat149 ▴ 80 • written 6.8 years ago by imalumberjack ▴ 10

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3.2k

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bioconductor biomart entrez gene identifiers ensembl ensembl mart

updated 7.7 years ago by Thomas Maurel ▴ 800 • written 7.7 years ago by daniel.carbajo • 0

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2.0k

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org.Hs.eg.db entrez gene identifiers ensemble

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by Marcus Aurelius • 0

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2.2k

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getBM entrez gene identifiers duplicate rnaseq

8.0 years ago Jose Luis Soto Vázquez • 0

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1.5k

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goseq entrez gene identifiers

updated 8.6 years ago by James W. MacDonald 67k • written 8.6 years ago by Mehmet Ilyas Cosacak • 0

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1.3k

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biomart ensembl ensemble mart entrez gene identifiers

8.9 years ago serpalma.v ▴ 60

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1.2k

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mta10 entrez gene identifiers

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by jacorvar ▴ 40

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14k

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org.hs.eg.db uniprot accessions entrez gene identifiers

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by Aditya ▴ 160

10 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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