Bioconductor Entrez

Showing : entrez • reset

votes

replies

5.5k

views

microarray limma kegg ENTREZ enrichment analysis

updated 4.8 years ago by Gordon Smyth 51k • written 4.8 years ago by omarrafiqued ▴ 50

votes

replies

2.5k

views

annotation entrez gene ids software error

updated 5.6 years ago by Gordon Smyth 51k • written 5.6 years ago by Raito92 ▴ 60

votes

1.9k

views

ensembl entrez biomart org.hs.eg.db

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by bettina.budeus • 0

votes

replies

2.2k

views

gage annotationdbi entrez ensembl

6.8 years ago colaneri ▴ 30

votes

replies

2.0k

views

conversion symbol entrez

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by dalloliogm ▴ 50

5 results • Page 1 of 1

Recent ...

Replies

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Votes

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

Awards • All