Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

6.9 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

8.2 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 8.7 years ago by Thomas Maurel ▴ 800 • written 8.7 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by andrew.j.skelton73 ▴ 370

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biomart ensembl ensemble mart entrez gene identifiers

9.0 years ago serpalma.v ▴ 60

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ensemble mart ensembl biomart ensembl release News

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R biomart ensemble mart

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by Gabriela Santos • 0

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Comment: GSVA on RNAseq data by Bob ▴ 10

Hi Robert, We were actually very interested in this problem in particular. It seems that using counts for gene sets with varying gene leng…

Comment: plyranges: find exact GRanges match keeping metadata columns by Michael Love 43k

But I will say if you are doing a lot of these, and require exact match, just making it a simple key -- eg `paste0(start,".",end)` -- seems…

Answer: Comparing Mock vs Infected in WT and Knockout Cells by Michael Love 43k

I recommend for questions about statistical analysis plan to meet with a local statistician or someone familiar with linear models in R. I …

Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi by ATpoint ★ 4.6k

WGCNA is no Bioconductor package. Consider biostars.org or bioinformatics Reddit, but if you do show a bit more effort please. People appre…

Answer: Error: lexical error: invalid char in json text (alevin-seurat) by ATpoint ★ 4.6k

Two things: 1) See https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#Alevin -- Your `colon_file`…

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A: how to extract Granges not overlapping with other ganges?

DESeq2 1.20.0 lfcshrink function

A: LIMMA on RT-PCR data

Answer: Efficiently working with HDF5-backed SingleCellExperiments

Efficiently working with HDF5-backed SingleCellExperiments

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