Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

6.7 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

8.0 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 8.5 years ago by Thomas Maurel ▴ 800 • written 8.5 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by andrew.j.skelton73 ▴ 370

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biomart ensembl ensemble mart entrez gene identifiers

8.8 years ago serpalma.v ▴ 60

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ensemble mart ensembl biomart ensembl release News

9.0 years ago amonida ▴ 20

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R biomart ensemble mart

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by Gabriela Santos • 0

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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

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Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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