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ensembl release
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5
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3.9k
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Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb
ensembl release
rnaseq
salmon
tximport
6.9 years ago
emmak
▴ 20
0
votes
2
replies
1.5k
views
Txtimport for kallisto on hg38 v87
txtimport
deseq2
ensembl release
updated 7.8 years ago by
James W. MacDonald
67k • written 7.8 years ago by
jarod_v6@libero.it
▴ 40
1
vote
1
reply
1.4k
views
News:
Ensembl release 86 is out!
ensembl
biomart
ensembl release
ensembl mart
News
8.3 years ago
Thomas Maurel
▴ 800
1
vote
0
replies
1.3k
views
News:
Ensembl release 85 is out!
ensembl
biomart
release85
ensembl release
mart
News
8.5 years ago
Thomas Maurel
▴ 800
4
votes
9
replies
3.4k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.7 years ago by
arielpaulson
▴ 20 • written 8.8 years ago by
Thomas Maurel
▴ 800
0
votes
0
replies
1.8k
views
News:
Ensembl 83 is out!
ensemble mart
ensembl
biomart
ensembl release
News
9.1 years ago
amonida
▴ 20
6 results • Page
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
Sorry, I had forgotten estimateGLMDisp() produces weights as well as NB dispersions. The weights from estimatGLMRobustDisp() were intended …
Answer: Mean variance curve troubleshoot filtering
by
Gordon Smyth
52k
You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…
Comment: How do I fix an odd voom plot in a combined dataset?
by
Gordon Smyth
52k
The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…
Comment: How do I fix an odd voom plot in a combined dataset?
by
1sunmic2
• 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Andre
• 0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…
Votes
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
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