Showing : enrichplot • reset
8
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6
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6.6k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 8 months ago by ▴ 30 • written 5.7 years ago by ▴ 160
0
votes
1
reply
1.5k
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
2
votes
2
replies
1.1k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
10 months ago Eva ▴ 10
2
votes
6
replies
3.3k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
12 months ago • updated 11 months ago Tobias • 0
0
votes
1
reply
636
views
visualizing GSEA showCategory question
enrichplot
updated 12 months ago by 67k • written 12 months ago by • 0
0
votes
2
replies
1.1k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 15 months ago by 67k • written 15 months ago by • 0
0
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0
replies
576
views
HeatPlot - Genes selections
enrichplot stringr heatplot
17 months ago ruba-mahmoud • 0
0
votes
3
replies
2.4k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 15 months ago by • 0 • written 18 months ago by • 0
0
votes
5
replies
1.6k
views
plot enrichment results
enrichplot clusterProfiler
updated 19 months ago by ▴ 760 • written 19 months ago by • 0
2
votes
4
replies
2.5k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
20 months ago Tyroone • 0
0
votes
1
reply
1.7k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 22 months ago by ★ 4.1k • written 23 months ago by • 0
0
votes
1
reply
874
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 2.0 years ago by 43k • written 2.0 years ago by • 0
0
votes
5
replies
3.1k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 17 months ago by • 0 • written 2.1 years ago by • 0
2
votes
3
replies
3.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 2.4 years ago by ▴ 140 • written 2.4 years ago by ▴ 10
0
votes
1
reply
2.2k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 2.3 years ago by ★ 1.2k • written 2.4 years ago by • 0
3
votes
5
replies
4.3k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 2.4 years ago by ★ 1.2k • written 2.7 years ago by ▴ 40
0
votes
3
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5.2k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 30
1
vote
3
replies
8.3k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.8 years ago by ★ 3.4k • written 2.8 years ago by • 0
0
votes
1
reply
1.4k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.8 years ago by • 0 • written 3.0 years ago by ▴ 10
5
votes
13
replies
5.5k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.9 years ago by ▴ 50 • written 2.9 years ago by • 0
2
votes
1
reply
1.8k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.2 years ago fatimaruizdelabastida ▴ 10
0
votes
1
reply
1.8k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
3.3 years ago Adarsh • 0
2
votes
4
replies
3.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
3.3 years ago Pahi ▴ 10
0
votes
0
replies
1.6k
views
EnrichGO
R enrichplot
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
1
vote
4
replies
5.8k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.8 years ago by • 0 • written 3.5 years ago by • 0
2
votes
6
replies
8.1k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
4.1 years ago Emilia ▴ 40
0
votes
1
reply
1.7k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.1 years ago by ▴ 40 • written 4.2 years ago by • 0
2
votes
1
reply
891
views
Parsing geoms to enrichplot
enrichplot
4.5 years ago Francois Marchildon ▴ 20
0
votes
0
replies
1.2k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.8 years ago jan.soderman • 0
0
votes
1
reply
2.4k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.0 years ago by ★ 4.1k • written 5.0 years ago by • 0
2
votes
4
replies
2.7k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 5.0 years ago by 67k • written 5.0 years ago by ▴ 30
0
votes
0
replies
1.4k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.0 years ago yurigorelik ▴ 10
0
votes
0
replies
1.9k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
6.7 years ago jan.soderman • 0
35 results • Page 1 of 1
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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k
I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105
Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
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Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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