Showing : enrichplot • reset
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190
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Error in cnetplot
enrichplot clusterProfiler
updated 13 days ago by ★ 4.1k • written 19 days ago by • 0
8
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6
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7.5k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 10 months ago by ▴ 30 • written 5.9 years ago by ▴ 180
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1
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1.8k
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 11 months ago by ★ 4.1k • written 12 months ago by • 0
2
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2
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1.3k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
12 months ago Eva ▴ 10
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6
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4.0k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
14 months ago • updated 13 months ago Tobias • 0
0
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1
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727
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visualizing GSEA showCategory question
enrichplot
updated 14 months ago by 68k • written 14 months ago by • 0
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2
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1.2k
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 17 months ago by 68k • written 18 months ago by • 0
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599
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HeatPlot - Genes selections
enrichplot stringr heatplot
19 months ago ruba-mahmoud • 0
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3
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2.6k
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gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 17 months ago by • 0 • written 20 months ago by • 0
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5
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1.9k
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plot enrichment results
enrichplot clusterProfiler
updated 21 months ago by ▴ 760 • written 21 months ago by • 0
2
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4
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2.8k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
22 months ago Tyroone • 0
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1
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1.8k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
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1
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917
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 2.2 years ago by 43k • written 2.2 years ago by • 0
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5
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3.4k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 19 months ago by • 0 • written 2.3 years ago by • 0
2
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3
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3.4k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 2.5 years ago by ▴ 150 • written 2.5 years ago by ▴ 10
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1
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2.4k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 2.5 years ago by ★ 1.2k • written 2.5 years ago by • 0
3
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5
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4.6k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 2.6 years ago by ★ 1.2k • written 2.9 years ago by ▴ 40
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3
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5.7k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 2.7 years ago by ★ 4.1k • written 2.8 years ago by ▴ 10
1
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1
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1.4k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by ▴ 30
1
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3
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9.1k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 3.0 years ago by ★ 3.4k • written 3.0 years ago by • 0
0
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1
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1.4k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 10
5
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13
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6.0k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.1 years ago by ▴ 50 • written 3.1 years ago by • 0
2
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1
reply
1.9k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
3.3 years ago fatimaruizdelabastida ▴ 10
0
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1
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2.0k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 3.4 years ago by • 0 • written 3.4 years ago by ▴ 10
0
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2
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1.9k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
3.5 years ago Adarsh • 0
2
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4
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3.8k
views
enrichDGN result can't be visualised by barplot
enrichplot
3.5 years ago Pahi ▴ 10
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0
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1.7k
views
EnrichGO
R enrichplot
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
1
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4
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6.4k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.0 years ago by • 0 • written 3.7 years ago by • 0
2
votes
6
replies
8.6k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
4.3 years ago • updated 4.2 years ago Emilia ▴ 40
0
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1
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1.7k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.3 years ago by ▴ 40 • written 4.3 years ago by • 0
2
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1
reply
933
views
Parsing geoms to enrichplot
enrichplot
4.7 years ago Francois Marchildon ▴ 20
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0
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1.2k
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similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.9 years ago jan.soderman • 0
0
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1
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2.5k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 5.2 years ago by ★ 4.1k • written 5.2 years ago by • 0
2
votes
4
replies
2.8k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 30
0
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0
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1.5k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.1 years ago yurigorelik ▴ 10
0
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0
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1.9k
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Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
6.8 years ago jan.soderman • 0
36 results • Page 1 of 1
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…
Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30
Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0
Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0
I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
Votes
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
Answer: SingleR with multiple single cell references
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