Bioconductor EnrichGO

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GOstats hyperGTest GO enrichGO clusterProfiler

updated 3 days ago by James W. MacDonald 68k • written 5 days ago by GA ▴ 10

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clusterProfiler enrichGO

updated 14 months ago by Michael Love 43k • written 14 months ago by cinzia.spagnoli • 0

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EnrichGO clusterProfiler

written 4.3 years ago by Carolina • 0

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RNASeq simplify clusterProfiler enrichGO simplifyEnrichment

2.6 years ago estafana.t98 • 0

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clusterProfiler enrichGO

2.8 years ago Shakiba • 0

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clusterProfiler enrichGO clusterPro

3.4 years ago slimyMS • 0

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clusterProfiler enrichGO

3.4 years ago samsiljee • 0

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enrichGO

3.9 years ago dailing57 • 0

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R TAIR clusterProfiler enrichGO Arabidopsis

updated 4.0 years ago by Guido Hooiveld ★ 4.1k • written 4.0 years ago by abby-s • 0

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clusterProfiler enrichGO

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by kavator ▴ 30

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software error enrichGO annotationHub clusterProfiler Job

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by bnajafpour • 0

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ClusterProfiler enrichGO

updated 5.2 years ago by James W. MacDonald 68k • written 5.2 years ago by Reb • 0

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enrichGO clusterprofiler

6.7 years ago MAP ▴ 10

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clusterprofiler enrichGO barplot dotplot

6.7 years ago MAP ▴ 10

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clusterProfiler enrichGO

7.6 years ago Francois Marchildon ▴ 20

15 results • Page 1 of 1

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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0

Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …

Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Votes

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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Autobiographer to Paul Harrison ▴ 100

Popular Question to mohammedtoufiq91 ▴ 10