Bioconductor Emptydrops

Showing : emptydrops • reset

votes

replies

776

views

CellRanger emptyDrops scRNAseq 10X

12 months ago rocanja ▴ 60

votes

1.2k

views

SingleCell emptyDrops 10X

updated 23 months ago by Peter Hickey ▴ 750 • written 23 months ago by sandra.garces.19 • 0

votes

replies

3.6k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

2.7 years ago • updated 2.6 years ago Peter Hickey ▴ 750

vote

1.3k

views

DropletUtils emptyDrops 10x

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Peter Hickey ▴ 750

votes

replies

2.5k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

votes

5.2k

views

DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

votes

replies

1.4k

views

dropletutils emptydrops

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by rosano • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All