Bioconductor Emptydrops

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801

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CellRanger emptyDrops scRNAseq 10X

13 months ago rocanja ▴ 60

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1.2k

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SingleCell emptyDrops 10X

updated 24 months ago by Peter Hickey ▴ 750 • written 24 months ago by sandra.garces.19 • 0

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3.7k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.7 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by Peter Hickey ▴ 750

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2.6k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.7 years ago by C T ▴ 140

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

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1.4k

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dropletutils emptydrops

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by rosano • 0

7 results • Page 1 of 1

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Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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