Bioconductor EmptyDrops

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776

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CellRanger emptyDrops scRNAseq 10X

12 months ago rocanja ▴ 60

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1.2k

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SingleCell emptyDrops 10X

updated 23 months ago by Peter Hickey ▴ 750 • written 23 months ago by sandra.garces.19 • 0

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3.6k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.7 years ago • updated 2.6 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Peter Hickey ▴ 750

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2.5k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

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1.4k

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dropletutils emptydrops

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by rosano • 0

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All

Scholar to Aaron Lun ★ 28k

Scholar to James W. MacDonald 68k