Bioconductor EmptyDrops

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695

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CellRanger emptyDrops scRNAseq 10X

10 months ago rocanja ▴ 60

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1.0k

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SingleCell emptyDrops 10X

updated 21 months ago by Peter Hickey ▴ 750 • written 21 months ago by sandra.garces.19 • 0

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3.4k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.5 years ago Peter Hickey ▴ 750

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DropletUtils emptyDrops 10x

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Peter Hickey ▴ 750

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2.4k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.3 years ago by Aaron Lun ★ 28k • written 5.4 years ago by C T ▴ 140

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5.1k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.5 years ago by Stefano Mangiola ▴ 20 • written 5.5 years ago by shbrief ▴ 20

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1.3k

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dropletutils emptydrops

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by rosano • 0

7 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k