Showing : edge • reset
0
votes
2
replies
2.0k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 2.4 years ago by 52k • written 2.4 years ago by • 0
0
votes
0
replies
895
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
3.1 years ago emily • 0
0
votes
2
replies
1.2k
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 5.5 years ago by 52k • written 5.5 years ago by • 0
0
votes
0
replies
961
views
Fold Change Calculation in edge package
edge microarray limma affy
5.8 years ago soumyab.g ▴ 10
0
votes
0
replies
762
views
Same results with static and time course analysis respectively in EDGE
edge
5.9 years ago xgt1986627 ▴ 10
0
votes
2
replies
820
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 10
1
vote
1
reply
812
views
export the significant results from EDGE
microarray edge
5.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
755
views
static experiment in EDGE
microarray edge
5.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
1.0k
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
6.7 years ago rubi ▴ 110
1
vote
7
replies
2.1k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
8.2 years ago • updated 7.2 years ago joe.d.moore.ii • 0
0
votes
2
replies
1.6k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 9.4 years ago by • 0 • written 9.5 years ago by • 0
3
votes
2
replies
1.8k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ▴ 20
12 results • Page 1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Locations • All
United States, 5 minutes ago
Austria, 17 minutes ago
United States, 17 minutes ago
United States, 21 minutes ago
Andorra, 54 minutes ago
Traffic: 1049 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6