Bioconductor Edge

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1.6k

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edgeR edge

updated 2.1 years ago by Gordon Smyth 52k • written 2.1 years ago by Isa • 0

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810

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edge Microarray longitudinal

2.8 years ago emily • 0

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1.0k

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edge DGE microarray

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by joanasabinopinto • 0

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906

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edge microarray limma affy

5.5 years ago soumyab.g ▴ 10

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728

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edge

5.5 years ago xgt1986627 ▴ 10

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774

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edge RNA-seq

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by xgt1986627 ▴ 10

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770

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microarray edge

5.6 years ago xgt1986627 ▴ 10

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712

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microarray edge

5.6 years ago xgt1986627 ▴ 10

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993

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edge differential gene expression timecourse interaction

6.4 years ago rubi ▴ 110

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1.9k

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edge qpcr qvalue

7.8 years ago • updated 6.9 years ago joe.d.moore.ii • 0

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1.5k

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edge timecourse fittimeseries

updated 9.1 years ago by Andrew Bass • 0 • written 9.2 years ago by warren.anderson • 0

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1.7k

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edge

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by Arne Muller ▴ 20

12 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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