Showing : edge • reset
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2
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Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 23 months ago by 51k • written 23 months ago by • 0
0
votes
0
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785
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Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.7 years ago emily • 0
0
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2
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1.0k
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Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 5.0 years ago by 51k • written 5.0 years ago by • 0
0
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0
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887
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Fold Change Calculation in edge package
edge microarray limma affy
5.4 years ago soumyab.g ▴ 10
0
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0
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713
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Same results with static and time course analysis respectively in EDGE
edge
5.4 years ago xgt1986627 ▴ 10
0
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2
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758
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 5.4 years ago by 67k • written 5.4 years ago by ▴ 10
1
vote
1
reply
757
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export the significant results from EDGE
microarray edge
5.5 years ago • updated 5.4 years ago xgt1986627 ▴ 10
0
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0
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695
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static experiment in EDGE
microarray edge
5.4 years ago xgt1986627 ▴ 10
0
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0
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973
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
6.2 years ago rubi ▴ 110
1
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7
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1.9k
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.7 years ago • updated 6.8 years ago joe.d.moore.ii • 0
0
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2
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1.5k
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edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 9.0 years ago by • 0 • written 9.0 years ago by • 0
3
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2
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1.7k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 9.0 years ago by ★ 28k • written 9.0 years ago by ▴ 20
12 results • Page 1 of 1
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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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