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Replies
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
by
James W. MacDonald
68k
Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…
Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You can use [bioc-run][1] to simplify things as well.
[1]: https://github.com/Bioconductor/bioc-run/tree/devel
Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You show how you modified the container, but not how you are running it, which is the critical part.
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
•
0
Thank you for your reply.
> Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …
Comment: Discrepancies in normalised count data vs unnormalised
by
ATpoint
★
4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
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