Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.4 years ago lli2 • 0
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3
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1.1k
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Heatmap for ebseq2 output
ebseq
5.5 years ago drkousi31 • 0
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.4 years ago jean.keller ▴ 10
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1.1k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.5 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.0 years ago vieuphoria ▴ 10
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1.0k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.3 years ago jbarker2 • 0
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1.5k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.3 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.6 years ago jbarker2 • 0
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2
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3.0k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.5 years ago by 67k • written 10.5 years ago by ▴ 10
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1.8k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by 51k
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1.9k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.8 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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