Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.6 years ago lli2 • 0
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3
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1.2k
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Heatmap for ebseq2 output
ebseq
5.6 years ago drkousi31 • 0
5
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.5 years ago by ★ 28k • written 6.5 years ago by • 0
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1.1k
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.5 years ago jean.keller ▴ 10
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1.1k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.6 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.2 years ago vieuphoria ▴ 10
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1.0k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.5 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.5 years ago jackipchiho ▴ 10
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2
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.7 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 10
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1.8k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by 52k
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2.0k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by ▴ 100
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1.2k
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.9 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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