Showing : ebseq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.9 years ago lli2 • 0
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3
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1.3k
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Heatmap for ebseq2 output
ebseq
5.9 years ago drkousi31 • 0
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1.3k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.8 years ago jean.keller ▴ 10
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1.2k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.9 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.5 years ago vieuphoria ▴ 10
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1.1k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.8 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.8 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
10.0 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 10
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1.9k
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by 52k
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2.1k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by ▴ 100
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1.2k
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.2 years ago Dario Strbenac ★ 1.6k
13 results • Page 1 of 1
Recent ...
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Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
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