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Showing :
ebayes
•
reset
8
votes
4
replies
1.5k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.7 years ago
snijesh
▴ 200
0
votes
5
replies
1.5k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.7 years ago by
Gordon Smyth
51k • written 4.7 years ago by
irene.roman
• 0
0
votes
6
replies
2.1k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.7 years ago by
Gordon Smyth
51k • written 5.7 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.8k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 6 months ago by
Gordon Smyth
51k • written 6.1 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.9k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.7 years ago
darthratus
• 0
1
vote
2
replies
1.6k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 7.0 years ago by
Gordon Smyth
51k • written 7.0 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.4k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
7.1 years ago
peirinl
• 0
1
vote
3
replies
1.8k
views
Error from eBayes in limma package
eBayes
limma
error
updated 7.3 years ago by
James W. MacDonald
67k • written 7.3 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.6k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.7 years ago
bag59
• 0
4
votes
2
replies
2.2k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 19 months ago by
Gordon Smyth
51k • written 7.8 years ago by
cemcdono
• 0
1
vote
1
reply
1.0k
views
Limma ebayes function error without any messages
limma
ebayes
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.9k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 9.2 years ago by
Gordon Smyth
51k • written 9.3 years ago by
ssrajan86
• 0
0
votes
1
reply
1.4k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 9.3 years ago by
James W. MacDonald
67k • written 9.3 years ago by
Vani
▴ 20
6
votes
5
replies
2.0k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.8 years ago by
Gordon Smyth
51k • written 9.8 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Ai
• 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2
by
icecreamlover
• 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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