Bioconductor Ebayes

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topTable MicroarrayData ebayes limma Microarray

4.1 years ago snijesh ▴ 200

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1.6k

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limma eBayes decideTests topTable

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by irene.roman • 0

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limma eBayes

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 10 months ago by Gordon Smyth 52k • written 6.4 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

7.0 years ago darthratus • 0

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1.7k

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ebayes limma bioconductor

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by reventropy2003 ▴ 10

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ebayes limma

7.4 years ago peirinl • 0

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1.9k

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eBayes limma error

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by calen.p.ryan • 0

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ebayes limma voom

8.0 years ago bag59 • 0

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2.3k

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limma ebayes

updated 22 months ago by Gordon Smyth 52k • written 8.1 years ago by cemcdono • 0

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1.1k

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limma ebayes

updated 9.3 years ago by Aaron Lun ★ 28k • written 9.3 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.1 years ago by Gordon Smyth 52k • written 10.1 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Votes

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

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