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Showing :
ebayes
•
reset
8
votes
4
replies
1.6k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
4.0 years ago
snijesh
▴ 200
0
votes
5
replies
1.6k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.9 years ago by
Gordon Smyth
52k • written 5.0 years ago by
irene.roman
• 0
0
votes
6
replies
2.3k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.9 years ago by
Gordon Smyth
52k • written 5.9 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.9k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 8 months ago by
Gordon Smyth
52k • written 6.3 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
2.0k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
7.0 years ago
darthratus
• 0
1
vote
2
replies
1.7k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 7.2 years ago by
Gordon Smyth
52k • written 7.2 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.5k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
7.3 years ago
peirinl
• 0
1
vote
3
replies
1.8k
views
Error from eBayes in limma package
eBayes
limma
error
updated 7.5 years ago by
James W. MacDonald
67k • written 7.5 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.7k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.9 years ago
bag59
• 0
4
votes
2
replies
2.2k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 21 months ago by
Gordon Smyth
52k • written 8.0 years ago by
cemcdono
• 0
1
vote
1
reply
1.1k
views
Limma ebayes function error without any messages
limma
ebayes
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.9k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 9.5 years ago by
Gordon Smyth
52k • written 9.5 years ago by
ssrajan86
• 0
0
votes
1
reply
1.4k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 9.6 years ago by
James W. MacDonald
67k • written 9.6 years ago by
Vani
▴ 20
6
votes
5
replies
2.1k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 10.1 years ago by
Gordon Smyth
52k • written 10.1 years ago by
Paulo Nuin
▴ 200
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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