Showing : easyRNAseq • reset
1
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2.5k
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mgcv not updating
mgcv easyRNASeq
updated 3.4 years ago by 25k • written 3.4 years ago by ▴ 10
0
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3
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1.2k
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simpleRNASeq easyRNAseq warnings edgeR error
simplernaseq easyrnaseq edger DEformats
updated 6.4 years ago by ▴ 320 • written 6.5 years ago by • 0
4
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5
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1.5k
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Warning: missing reverse strand option in easyRNASeq.
easyrnaseq rnaseq strand
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 10
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1
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1.5k
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simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq easyrnaseq s4vectors
updated 8.6 years ago by ▴ 320 • written 8.6 years ago by • 0
0
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2
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1.7k
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Package installation errors for Bioconductor and easyRNASeq
installation biocinstaller easyrnaseq
updated 8.6 years ago by 25k • written 8.6 years ago by • 0
2
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2
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1.4k
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Error reading BAM file with duplicated header in easyRNAseq and GenomicAlignments
software error easyrnaseq genomicalignments bam
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 10
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5
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2.4k
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easyRNAseq annotation file
easyrnaseq annotation
8.8 years ago kylvalda • 0
0
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17
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2.9k
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Issue with easyRNASeq
easyRNASeq error
9.0 years ago ea11g0 • 0
1
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13
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3.1k
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Several issues with the package easyRNASeq
easyrnaseq bug
9.0 years ago Michael Dondrup ▴ 10
0
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2
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1.3k
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simpleRNASeq error importing BAM files
simpleRNASeq easyRNASeq
updated 9.0 years ago by 66k • written 9.0 years ago by • 0
0
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6
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1.8k
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easyRNASeq: "Error in IRangesList"
easyRNASeq
9.1 years ago surjray • 0
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5
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2.6k
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count tables created with easyRNASeq and the rpkm() function from edgeR
easyrnaseq edger rpkm
updated 9.4 years ago by ▴ 320 • written 9.4 years ago by ▴ 80
2
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6
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2.0k
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easyRNAseq says Your annotation is not in sync with your alignments!
easyRNAseq
updated 9.4 years ago by ▴ 320 • written 9.4 years ago by • 0
0
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1
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3.2k
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easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
easyrnaseq
9.6 years ago sylvian • 0
1
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5
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2.2k
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Getting a count matrix from a SummerizedExpriment with EasyRNASeq
easyrnaseq
9.7 years ago Sylvain Foisy ▴ 80
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1
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1.2k
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Devel version of easyRNASeq: using the simpleRNASeq method gives an error
easyRNASeq easyRNASeq
updated 10.3 years ago by ▴ 320 • written 10.3 years ago by ▴ 80
0
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2
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1.3k
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Devel version of easyRNASeq: using the simpleRNASeq method gives an error
Annotation easyRNASeq Annotation easyRNASeq
updated 10.3 years ago by ▴ 80 • written 10.3 years ago by ▴ 320
0
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1
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1.4k
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easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by 51k
0
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1
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1.9k
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Using a countDataSet as input data in DESeq2
easyRNASeq easyRNASeq
updated 10.6 years ago by 42k • written 10.6 years ago by ★ 13k
0
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0
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1.2k
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easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges easyRNASeq Coverage GO
10.6 years ago Nicolas Delhomme ▴ 320
0
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2
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1.6k
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easyRNAseq and DEseq for no replicate RNAseq
RNASeq PROcess easyRNASeq RNASeq PROcess easyRNASeq
updated 10.6 years ago by ▴ 320 • written 10.6 years ago by ▴ 10
0
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8
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2.1k
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Using easyRNASeq package: question about BAM/BAI and links to them
easyRNASeq easyRNASeq
updated 10.6 years ago by ▴ 80 • written 10.6 years ago by ▴ 80
0
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7
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2.7k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 10.7 years ago by ★ 1.2k • written 10.7 years ago by ★ 13k
0
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1
reply
1.4k
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eayRNASeq with Ensemble GRCh37 help
Annotation Organism easyRNASeq DESeq2 Annotation Organism easyRNASeq DESeq2
updated 10.8 years ago by ★ 1.2k • written 10.8 years ago by ▴ 10
0
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5
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1.7k
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EasyRNAseq - error in building count table - Error in unlist
Sequencing RNASeq edgeR easyRNASeq Sequencing RNASeq edgeR easyRNASeq
updated 10.8 years ago by ★ 1.2k • written 10.8 years ago by ★ 13k
0
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0
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1.2k
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error in "count" for SummarizedExperiment in easyRNASeq
easyRNASeq DESeq2 easyRNASeq DESeq2
10.8 years ago Lescai, Francesco ▴ 380
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0
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1.1k
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easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Annotation Organism edgeR DESeq easyRNASeq Annotation Organism edgeR DESeq easyRNASeq
11.1 years ago Gabriele Zoppoli ▴ 50
0
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1
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1.1k
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it is strange that I cannot get the fpkm by using easyRNASeq
Annotation BSgenome BSgenome easyRNASeq Annotation BSgenome BSgenome easyRNASeq
updated 11.2 years ago by ▴ 30 • written 11.2 years ago by ★ 13k
0
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1
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1.5k
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some problems of easyRNASeq� : about the gtf files
Annotation easyRNASeq Annotation easyRNASeq
updated 11.3 years ago by ★ 1.2k • written 11.3 years ago by ★ 13k
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0
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1.4k
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RPKM calculation genewise
Normalization Visualization easyRNASeq Normalization Visualization easyRNASeq
11.3 years ago delhomme@embl.de ★ 1.2k
0
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0
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867
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easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
11.4 years ago delhomme@embl.de ★ 1.2k
0
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0
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990
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easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
11.4 years ago Bayles, Darrell ▴ 10
0
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0
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903
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easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
11.4 years ago delhomme@embl.de ★ 1.2k
0
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0
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819
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easyRNASeq read counts varying when recounting same sample!
biomaRt easyRNASeq biomaRt easyRNASeq
11.4 years ago René ▴ 30
0
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1
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1.4k
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Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 11.4 years ago by ★ 1.2k • written 11.4 years ago by ★ 13k
0
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2
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2.3k
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using easyRNASeq to calculate RPKM values
easyRNASeq easyRNASeq
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ▴ 260
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1
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1.3k
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easyRNAseq remove overlapping features
Annotation BSgenome BSgenome IRanges easyRNASeq Annotation BSgenome BSgenome IRanges
updated 11.5 years ago by ★ 1.2k • written 11.5 years ago by ▴ 150
0
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0
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1.6k
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Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
11.5 years ago Richard Friedman ★ 2.0k
0
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7
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2.3k
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Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 11.6 years ago by ★ 1.2k • written 11.6 years ago by ★ 2.0k
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2
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1.3k
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error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 11.6 years ago by 66k • written 11.6 years ago by ★ 2.0k
0
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1
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1.0k
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easyRNASeq and edgeR
BSgenome BSgenome edgeR easyRNASeq BSgenome BSgenome edgeR easyRNASeq
updated 11.6 years ago by ★ 1.2k • written 11.6 years ago by ★ 13k
0
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3
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2.0k
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Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 11.6 years ago by 21k • written 11.6 years ago by ★ 2.0k
0
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0
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1.3k
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get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
11.7 years ago delhomme@embl.de ★ 1.2k
0
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1
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1.4k
views
error in easyRNASeq
RNASeq BSgenome BSgenome easyRNASeq RNASeq BSgenome BSgenome easyRNASeq
updated 11.7 years ago by ★ 1.2k • written 11.7 years ago by ▴ 510
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0
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778
views
bam files in sub-directories
easyRNASeq easyRNASeq
11.7 years ago RenéBöttcher ▴ 20
0
votes
1
reply
877
views
bam files in sub-directories
easyRNASeq easyRNASeq
updated 11.7 years ago by ★ 1.2k • written 11.7 years ago by ★ 13k
0
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0
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877
views
question on easyRNASeq developer version
GLAD easyRNASeq GLAD easyRNASeq
11.7 years ago delhomme@embl.de ★ 1.2k
0
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0
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931
views
get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
11.7 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
879
views
warnings on easyRNASeq package
Annotation Organism PROcess GenomicRanges easyRNASeq Annotation Organism PROcess
updated 11.8 years ago by ▴ 10 • written 11.8 years ago by ★ 1.2k
0
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2
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1.1k
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RNAseq object
RNASeq DESeq easyRNASeq RNASeq DESeq easyRNASeq
updated 11.8 years ago by ★ 4.2k • written 11.8 years ago by ★ 13k
50 results • Page 1 of 1
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Comment: limma comparison for small sample size and how to get covariance matrix by Gordon Smyth 51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data by Elodie • 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
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Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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