Bioconductor EBayes

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topTable MicroarrayData ebayes limma Microarray

4.0 years ago snijesh ▴ 200

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1.6k

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limma eBayes decideTests topTable

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by irene.roman • 0

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limma eBayes

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 8 months ago by Gordon Smyth 52k • written 6.3 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

7.0 years ago • updated 6.9 years ago darthratus • 0

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ebayes limma bioconductor

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by reventropy2003 ▴ 10

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ebayes limma

7.3 years ago peirinl • 0

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1.8k

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eBayes limma error

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by calen.p.ryan • 0

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ebayes limma voom

7.9 years ago bag59 • 0

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2.2k

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limma ebayes

updated 21 months ago by Gordon Smyth 52k • written 8.0 years ago by cemcdono • 0

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1.1k

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limma ebayes

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 9.6 years ago by James W. MacDonald 67k • written 9.6 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.1 years ago by Gordon Smyth 52k • written 10.1 years ago by Paulo Nuin ▴ 200

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Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

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Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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