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eBayes
•
reset
6
votes
4
replies
1.3k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.4 years ago
snijesh
▴ 20
0
votes
5
replies
1.3k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.4 years ago by
Gordon Smyth
51k • written 4.4 years ago by
irene.roman
• 0
0
votes
6
replies
1.9k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.4 years ago by
Gordon Smyth
51k • written 5.4 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.6k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 8 weeks ago by
Gordon Smyth
51k • written 5.7 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.7k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.4 years ago
darthratus
• 0
1
vote
2
replies
1.5k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.7 years ago by
Gordon Smyth
51k • written 6.7 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.2k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.7 years ago
peirinl
• 0
1
vote
3
replies
1.6k
views
Error from eBayes in limma package
eBayes
limma
error
updated 7.0 years ago by
James W. MacDonald
66k • written 7.0 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.5k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.4 years ago
bag59
• 0
4
votes
2
replies
2.0k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 14 months ago by
Gordon Smyth
51k • written 7.5 years ago by
cemcdono
• 0
1
vote
1
reply
943
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.8k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.9 years ago by
Gordon Smyth
51k • written 8.9 years ago by
ssrajan86
• 0
0
votes
1
reply
1.3k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 9.0 years ago by
James W. MacDonald
66k • written 9.0 years ago by
Vani
▴ 20
6
votes
5
replies
1.9k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.5 years ago by
Gordon Smyth
51k • written 9.5 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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