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Answer: DESeq2 - am I extracting results incorrectly?
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James W. MacDonald
68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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Luca
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I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset
by
ATpoint
★
4.8k
If you check the underlying code a bit you find that there is a file with data sources:
```r
modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★
4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
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1324087964
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![enter image description here][1]
[1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9
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