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duplicate GenomicInteractions

4.7 years ago dogancan • 0

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deseq2 DESeqDataSetFromMatrix duplicate

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by Assa Yeroslaviz ★ 1.5k

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msnbase duplicate rforproteomics

updated 7.0 years ago by Laurent Gatto 1.6k • written 7.0 years ago by joris.vanhoutven ▴ 10

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alignment duplicate

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Frocha ▴ 20

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r grangeslist duplicate

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by Jurat Shahidin ▴ 80

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getBM entrez gene identifiers duplicate rnaseq

8.1 years ago Jose Luis Soto Vázquez • 0

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k