Bioconductor Duplicate

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duplicate GenomicInteractions

5.0 years ago dogancan • 0

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deseq2 DESeqDataSetFromMatrix duplicate

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Assa Yeroslaviz ★ 1.5k

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msnbase duplicate rforproteomics

updated 7.3 years ago by Laurent Gatto 1.6k • written 7.3 years ago by joris.vanhoutven ▴ 10

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alignment duplicate

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by Frocha ▴ 20

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r grangeslist duplicate

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Jurat Shahidin ▴ 80

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getBM entrez gene identifiers duplicate rnaseq

8.3 years ago Jose Luis Soto Vázquez • 0

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Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k

Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Popular Question to caroline.zanchi • 0