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DTU DEXSeq RNADTU

updated 3.3 years ago by Alejandro Reyes ★ 1.9k • written 3.7 years ago by Nirad ▴ 10

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1.6k

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DESeq2 DRIMSeq dtu RNASeq

3.8 years ago sbcn ▴ 80

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2.0k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 3.9 years ago by k.vitting.seerup ▴ 120 • written 4.0 years ago by jbono ▴ 10

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1.5k

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DRIMSeq R DTU technical replicates deseq2

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by poecile.pal • 0

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2.6k

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RATs RNA-Seq Isoforms DTU expression

updated 5.8 years ago by fruce_ki ▴ 20 • written 5.8 years ago by UserAnonyme • 0

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1.7k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.0 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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4.1k

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tximport dtu salmon TPM rnaseqDTU

written 6.1 years ago by fiona.dick91 ▴ 60

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2.9k

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rnaseqDTU dtu

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by rbenel ▴ 40

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1.4k

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DTU DRIMSeq rnaseqDTU

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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2.3k

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drimseq stageR dtu salmon rna seq

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.8 years ago by fiona.dick91 ▴ 60

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1.5k

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drimseq DTU

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

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A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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