Bioconductor Drosophila melanogaster

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1.8k

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R biomart drosophila melanogaster ensembl

updated 6.8 years ago by Mike Smith ★ 6.6k • written 6.8 years ago by JD • 0

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2.2k

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drosophila melanogaster multiple time points deseq2 results development

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by wariobrega • 0

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3.8k

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Gostats go term annotation drosophila melanogaster error

updated 7.8 years ago by tlaguna ▴ 10 • written 8.5 years ago by nooshin ▴ 300

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1.3k

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bsgenome drosophila melanogaster bsgnome forge

8.1 years ago nadia.goue • 0

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3.6k

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drosophila melanogaster quasR genomicfeatures genomicranges alignment

updated 9.4 years ago by Hervé Pagès 16k • written 9.5 years ago by Fiona ▴ 70

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1.7k

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genome annotation drosophila melanogaster org.Mm.eg.db

updated 9.7 years ago by Marc Carlson ★ 7.2k • written 9.7 years ago by Patrick Schorderet ▴ 20

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1.5k

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VariantAnnotation promoter drosophila melanogaster

updated 9.9 years ago by Valerie Obenchain ★ 6.8k • written 9.9 years ago by lidia.mateo ▴ 30

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1.5k

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Sequencing Genetics Drosophila melanogaster Sequencing Genetics Drosophila melanogaster

11.8 years ago Peter Sørensen (HAG) ▴ 60

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1.4k

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Drosophila melanogaster TranscriptDb biomaRt GenomicFeatures genomes Drosophila melanogaster

12.5 years ago Malcolm Cook ★ 1.6k

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1.2k

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GO Anopheles gambiae Drosophila melanogaster genomes GO Anopheles gambiae genomes

15.2 years ago Rhoda Kinsella ▴ 660

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1.3k

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Microarray Drosophila melanogaster drosophila2 Microarray Drosophila melanogaster drosophila2

updated 16.1 years ago by Wolfgang Huber ★ 13k • written 16.1 years ago by Paolo Innocenti ▴ 320

11 results • Page 1 of 1

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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you James, that really helped! I tried CODE `enter code here` but I must have dome it incorrectly, as it showed all in red.

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by James W. MacDonald 67k

Please come back to the support site and view your post - I've fixed it for you. If you want to show people your targets file, just paste t…

Votes

Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

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Popular Question to Jenny Drnevich ★ 2.0k

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k