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NiKo
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3.7 years ago • updated 3.6 years ago
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
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I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code:
[Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
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The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
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ATpoint
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> since there doesn't seem to be as much count variability,
No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
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Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
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I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
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