Bioconductor Dream

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limma DifferentialExpression variancePartition dream

updated 4 months ago by James W. MacDonald 68k • written 4 months ago by abadgerw • 0

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limma DifferentialExpression variancePartition dream

4 months ago abadgerw • 0

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846

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limma DifferentialExpression variancePartition dream

4 months ago abadgerw • 0

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variancePartition mixedmodel dream

19 months ago hayleyw • 0

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1.1k

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RNAseq variancePartition edgeR dream

2.1 years ago DH • 0

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1.5k

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variancePa variancePartition limma-voom dream

updated 2.1 years ago by Gordon Smyth 52k • written 2.1 years ago by Le • 0

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3.2k

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dream variancePartition limma differential expression repeated measures

updated 5.5 years ago by Gordon Smyth 52k • written 5.5 years ago by hermidalc ▴ 20

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2.6k

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limma voom variancePartition dream

updated 5.5 years ago by gabriel.hoffman ▴ 170 • written 5.8 years ago by Ben ▴ 50

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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Scholar to James W. MacDonald 68k