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dream
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makeContrastsDream for Interaction
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
0
votes
1
reply
270
views
Merge Replicates vs Mixed Model
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
0
votes
9
replies
1.3k
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How long does it usually take to complete dream() from start to finish?
variancePartition
mixedmodel
dream
15 months ago
hayleyw
• 0
1
vote
4
replies
959
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Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq
variancePartition
edgeR
dream
20 months ago
DH
• 0
0
votes
5
replies
1.3k
views
Semi-technical replicates and voom sample weights
variancePa
variancePartition
limma-voom
dream
updated 20 months ago by
Gordon Smyth
51k • written 21 months ago by
Le
• 0
9
votes
11
replies
2.9k
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 5.1 years ago by
Gordon Smyth
51k • written 5.1 years ago by
hermidalc
▴ 20
4
votes
3
replies
2.2k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma
voom
variancePartition
dream
updated 5.1 years ago by
gabriel.hoffman
▴ 160 • written 5.4 years ago by
Ben
▴ 50
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
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https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
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https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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