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dream
•
reset
0
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9
replies
1.3k
views
How long does it usually take to complete dream() from start to finish?
variancePartition
mixedmodel
dream
14 months ago
hayleyw
• 0
1
vote
4
replies
945
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq
variancePartition
edgeR
dream
20 months ago
DH
• 0
0
votes
5
replies
1.3k
views
Semi-technical replicates and voom sample weights
variancePa
variancePartition
limma-voom
dream
updated 20 months ago by
Gordon Smyth
51k • written 20 months ago by
Le
• 0
9
votes
11
replies
2.9k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 5.1 years ago by
Gordon Smyth
51k • written 5.1 years ago by
hermidalc
▴ 20
4
votes
3
replies
2.2k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma
voom
variancePartition
dream
updated 5.1 years ago by
gabriel.hoffman
▴ 160 • written 5.4 years ago by
Ben
▴ 50
5 results • Page
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Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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