Bioconductor Dplyr

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667

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dplyr TreeSummarizedExperiment

updated 16 months ago by Michael Love 43k • written 16 months ago by question_guy • 0

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1.9k

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dplyr IsoformSwitchAnalyzeR

written 21 months ago by ramon.dslps • 0

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16k

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AnnotationHub dplyr

updated 2.5 years ago by SmallChess ▴ 10 • written 4.2 years ago by georgia.katsoula ▴ 40

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1.7k

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dplyr tidyr

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by Marco Blanchette ▴ 30

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2.0k

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GenomicRanges S4Vectors dplyr

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by liz.ingsimmons ▴ 140

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2.2k

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tcgabiolinks dplyr DT

6.3 years ago Mithil Gaikwad • 0

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3.5k

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exprs dplyr Biobase

6.7 years ago Wolfgang Huber ★ 13k

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7.5k

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bioconductor dplyr select

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by abedini.jaleh ▴ 10

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1.5k

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biocparallel curatedmetagenomicdata parallel dplyr

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by Lucas Schiffer ▴ 240

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18k

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r granges dplyr error handling

updated 8.3 years ago by Mike Smith ★ 6.6k • written 8.3 years ago by Jurat Shahidin ▴ 80

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4.1k

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geometadb dplyr Tutorial

9.6 years ago Sean Davis 21k

11 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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