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dnastringset
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2
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1.0k
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
6.5 years ago
s.ghignone
▴ 10
3
votes
4
replies
4.2k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
vinod.acear
▴ 50
2
votes
5
replies
5.3k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Sophie
• 0
0
votes
2
replies
1.1k
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
8.2 years ago
XIA.PAN
▴ 20
6
votes
6
replies
6.9k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
6.0k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.2k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 9.1 years ago by
Robert Stojnic
▴ 50 • written 9.1 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.7k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.4 years ago
ben.ward
▴ 30
0
votes
3
replies
1.4k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
vinod.acear
▴ 50
15
votes
2
replies
19k
views
Extract sequence from DNAStringSet object
dnastringset
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
komal.rathi
▴ 120
3
votes
8
replies
2.1k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
9.5 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.9k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
10.0 years ago
dan.gatti
• 0
12 results • Page
1 of 1
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Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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