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Juan Higareda
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written 24 months ago by
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Recent ...
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Comment: Differing results with DESeq2
by
JKim
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My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
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Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
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This is [covered in the vignette.][1]
[1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
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sergisayolspuig
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Hi there,
`reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
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That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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