Bioconductor Diffsplice

Showing : diffsplice • reset

vote

replies

1.0k

views

diffSplice limma

3.3 years ago jamie.gearing ▴ 60

votes

replies

933

views

limma diffSplice

updated 4.2 years ago by Gordon Smyth 51k • written 4.2 years ago by gerberst • 0

vote

replies

1.6k

views

differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

votes

replies

1.3k

views

limma diffSplice

updated 7.6 years ago by Gordon Smyth 51k • written 7.6 years ago by willj ▴ 30

votes

replies

3.6k

views

edgeR limma diffSplice DEXSeq

updated 8.3 years ago by Charity Law ▴ 90 • written 8.3 years ago by maltethodberg ▴ 180

votes

replies

1.3k

views

limma diffSplice plotSplice exons annotation

9.2 years ago Jose M Garcia Manteiga ▴ 310

6 results • Page 1 of 1

Recent ...

Replies

Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20