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diffsplice
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1
vote
2
replies
890
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Selecting pairs of exons from differentially spliced genes
diffSplice
limma
2.9 years ago
jamie.gearing
▴ 60
2
votes
3
replies
809
views
Reasoning behind weighting of of exon expression values in limma diffSplice function
limma
diffSplice
updated 3.8 years ago by
Gordon Smyth
51k • written 3.8 years ago by
gerberst
• 0
1
vote
3
replies
1.4k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
relathman
▴ 20
5
votes
2
replies
1.2k
views
Warning messages from diffSplice in Limma
limma
diffSplice
updated 7.2 years ago by
Gordon Smyth
51k • written 7.2 years ago by
willj
▴ 30
16
votes
6
replies
3.4k
views
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR
limma
diffSplice
DEXSeq
updated 7.9 years ago by
Charity Law
▴ 90 • written 7.9 years ago by
maltethodberg
▴ 180
0
votes
0
replies
1.2k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.9 years ago
Jose M Garcia Manteiga
▴ 310
6 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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