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diffSplice limma

3.5 years ago jamie.gearing ▴ 60

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980

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limma diffSplice

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by gerberst • 0

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1.6k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by relathman ▴ 20

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1.4k

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limma diffSplice

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by willj ▴ 30

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3.7k

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edgeR limma diffSplice DEXSeq

updated 8.5 years ago by Charity Law ▴ 90 • written 8.5 years ago by maltethodberg ▴ 180

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1.3k

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limma diffSplice plotSplice exons annotation

9.5 years ago Jose M Garcia Manteiga ▴ 310

6 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

Comment: DESeq2 analysis with transcript counts by kahunroleh • 0

Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

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Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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Popular Question to Malcolm Cook ★ 1.6k