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diffsplice
•
reset
1
vote
2
replies
1.1k
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Selecting pairs of exons from differentially spliced genes
diffSplice
limma
3.6 years ago
jamie.gearing
▴ 60
2
votes
3
replies
999
views
Reasoning behind weighting of of exon expression values in limma diffSplice function
limma
diffSplice
updated 4.5 years ago by
Gordon Smyth
52k • written 4.5 years ago by
gerberst
• 0
1
vote
3
replies
1.7k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
relathman
▴ 20
5
votes
2
replies
1.4k
views
Warning messages from diffSplice in Limma
limma
diffSplice
updated 7.9 years ago by
Gordon Smyth
52k • written 7.9 years ago by
willj
▴ 30
16
votes
6
replies
3.8k
views
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR
limma
diffSplice
DEXSeq
updated 8.6 years ago by
Charity Law
▴ 90 • written 8.6 years ago by
maltethodberg
▴ 180
0
votes
0
replies
1.3k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
9.6 years ago
Jose M Garcia Manteiga
▴ 310
6 results • Page
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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
• 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table
by
shepherl
4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
shepherl
4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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