Showing : diffsplice • reset
1
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2
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1.1k
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Selecting pairs of exons from differentially spliced genes
diffSplice limma
3.4 years ago jamie.gearing ▴ 60
2
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3
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952
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Reasoning behind weighting of of exon expression values in limma diffSplice function
limma diffSplice
updated 4.2 years ago by 52k • written 4.2 years ago by • 0
1
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3
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1.6k
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Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage exon array analysis annotation hta2.0 diffsplice
updated 7.3 years ago by 67k • written 7.3 years ago by ▴ 20
5
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2
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1.3k
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Warning messages from diffSplice in Limma
limma diffSplice
updated 7.7 years ago by 52k • written 7.7 years ago by ▴ 30
16
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6
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3.7k
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Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR limma diffSplice DEXSeq
updated 8.4 years ago by ▴ 90 • written 8.4 years ago by ▴ 180
0
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0
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1.3k
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
9.3 years ago Jose M Garcia Manteiga ▴ 310
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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