Showing : diffrential expression • reset
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makeContrasts for comparing multiple levels of a factor variable to the reference level
diffrential expression limma makeContrasts
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 10
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Downstream analysis for Salmon output: IsoformSwitchAnalyzeR or TSIS?
isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR
6.5 years ago rbenel ▴ 40
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
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