Bioconductor DiffSplice

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diffSplice limma

3.3 years ago jamie.gearing ▴ 60

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935

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limma diffSplice

updated 4.2 years ago by Gordon Smyth 51k • written 4.2 years ago by gerberst • 0

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1.6k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

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1.3k

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limma diffSplice

updated 7.6 years ago by Gordon Smyth 51k • written 7.6 years ago by willj ▴ 30

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3.6k

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edgeR limma diffSplice DEXSeq

updated 8.3 years ago by Charity Law ▴ 90 • written 8.3 years ago by maltethodberg ▴ 180

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1.3k

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limma diffSplice plotSplice exons annotation

9.3 years ago Jose M Garcia Manteiga ▴ 310

6 results • Page 1 of 1

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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

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Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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