Bioconductor DiffSplice

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diffSplice limma

3.6 years ago jamie.gearing ▴ 60

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limma diffSplice

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by gerberst • 0

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1.7k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by relathman ▴ 20

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1.4k

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limma diffSplice

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by willj ▴ 30

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3.8k

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edgeR limma diffSplice DEXSeq

updated 8.6 years ago by Charity Law ▴ 90 • written 8.6 years ago by maltethodberg ▴ 180

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1.3k

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limma diffSplice plotSplice exons annotation

9.6 years ago Jose M Garcia Manteiga ▴ 310

6 results • Page 1 of 1

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Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val by James W. MacDonald 68k

You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.

Answer: Limma - Complex 2-way multi-level contrast with paired samples by James W. MacDonald 68k

If you are fitting donor as a fixed effect you do not also need to fit as a random effect. The limma package fits a generalized least squar…

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.7k

Yes, perfectly valid. Analyzing counts from high-throughput experiments with DESeq2 (or edgeR, or limma) is standard. After all, what DiffB…

Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110

Force=TRUE did the trick. Thank you.

Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0

[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…

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Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

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