updated 9.0 years ago by
W. Evan Johnson
▴
870
•
written 9.0 years ago by
svlachavas
▴
840
1
vote
2
replies
2.2k
views
Recent ...
Replies
Answer: SingleR with multiple single cell references
by
Aaron Lun
★
28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★
4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand?
Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★
4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★
13k
Dear Ingrid,
thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Awards
• All
Popular Question to
maltethodberg
▴
180
Popular Question to
abadgerw
•
0
Popular Question to
Jim Nemesh
▴
10
Popular Question to
Wolfgang Huber
★
13k
Teacher to
James W. MacDonald
68k
Locations
• All
EMBL European Molecular Biology Laboratory, 1 hour ago
The city by the bay, 1 hour ago
Hong Kong, 6 hours ago
Germany, 6 hours ago
United States, 6 hours ago
EMBL European Molecular Biology Laboratory, 1 hour ago
The city by the bay, 1 hour ago
Hong Kong, 6 hours ago
Germany, 6 hours ago
United States, 6 hours ago
Traffic: 1025 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6