Bioconductor DesignMatrix

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299

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DESeq2 Designmatrix limma

updated 4 months ago by James W. MacDonald 67k • written 4 months ago by Neha • 0

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530

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subsettingdata edgeR designmatrix

updated 6 months ago by Gordon Smyth 51k • written 6 months ago by prity6459 • 0

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342

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limma designmatrix

updated 7 months ago by Gordon Smyth 51k • written 7 months ago by avery • 0

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1.2k

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DESeq2 designmatrix edgeR limma tidybulk

updated 21 months ago by Michael Love 42k • written 21 months ago by aditya.m ▴ 10

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1.5k

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R designmatrix edgeR limma model.matrix

23 months ago Abdul ▴ 20

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1.6k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.0 years ago by Gordon Smyth 51k • written 3.1 years ago by rebecca.lea.johnston • 0

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1.3k

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designmatrix deseq2 DESeq2

updated 3.1 years ago by swbarnes2 ★ 1.4k • written 3.1 years ago by OST • 0

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1.3k

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designmatrix RNA-seq limma

updated 3.6 years ago by Gordon Smyth 51k • written 3.6 years ago by athief ▴ 20

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805

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designmatrix DifferentialExpression edgeR RNAseq

3.7 years ago nageshprabhu.k ▴ 10

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1.2k

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MutlipleFactors DesignMatrix edgeR

3.8 years ago Debayan ▴ 20

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1.1k

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edgeR pairedsamples designmatrix

3.8 years ago sfidemw • 0

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881

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deseq2 miRNASeq designmatrix Batch

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by anshulmbi • 0

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999

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edger r differentialanalysis rnaseq designmatrix

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Beginner ▴ 60

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1.3k

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Limma designMatrix

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Keifa ▴ 10

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1.5k

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limma microarray designmatrix

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by nashchem • 0

15 results • Page 1 of 1

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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0

Any update on the resolution to this? I'm having the same issue with another species.

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20