Bioconductor DesignMatrix

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424

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limma DifferentialExpression Designmatrix

4 months ago Tadeoye ▴ 20

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437

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DESeq2 Designmatrix limma

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by Neha • 0

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750

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subsettingdata edgeR designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by prity6459 • 0

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454

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limma designmatrix

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by avery • 0

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1.4k

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DESeq2 designmatrix edgeR limma tidybulk

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by aditya.m ▴ 10

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1.6k

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R designmatrix edgeR limma model.matrix

2.4 years ago Abdul ▴ 20

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1.8k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 3.5 years ago by Gordon Smyth 52k • written 3.5 years ago by rebecca.lea.johnston • 0

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1.5k

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designmatrix deseq2 DESeq2

updated 3.5 years ago by swbarnes2 ★ 1.4k • written 3.5 years ago by OST • 0

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1.4k

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designmatrix RNA-seq limma

updated 4.0 years ago by Gordon Smyth 52k • written 4.1 years ago by athief ▴ 20

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888

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designmatrix DifferentialExpression edgeR RNAseq

4.2 years ago nageshprabhu.k ▴ 10

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1.3k

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MutlipleFactors DesignMatrix edgeR

4.2 years ago Debayan ▴ 20

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1.3k

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edgeR pairedsamples designmatrix

4.2 years ago sfidemw • 0

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1.0k

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deseq2 miRNASeq designmatrix Batch

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by anshulmbi • 0

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1.1k

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edger r differentialanalysis rnaseq designmatrix

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Beginner ▴ 60

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1.5k

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Limma designMatrix

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Keifa ▴ 10

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1.6k

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limma microarray designmatrix

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by nashchem • 0

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

GSVA ssGSEA vs. Broad implementation of ssGSEA

Comment: biomaRt server error, and mirrors do not help

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