Bioconductor Deseqdatasetfrommatrix

Showing : deseqdatasetfrommatrix • reset

votes

498

views

DESeqDataSetFromMatrix dds DESeq2

updated 15 months ago by James W. MacDonald 67k • written 15 months ago by naomi.croft • 0

votes

replies

19k

views

DESeqDataSetFromMatrix

3.6 years ago Gian ▴ 30

vote

replies

5.3k

views

help DESeq2 DESeqDataSetFromMatrix rownames

updated 2.5 years ago by Sanatan • 0 • written 3.7 years ago by dorina.jamniczky • 0

votes

replies

3.5k

views

deseq2 replicates error DESeqDataSetFromMatrix

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Yonatan Amzaleg • 0

votes

replies

3.0k

views

deseq2 deseqdatasetfrommatrix rnaseq affy

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by matthew.sinton • 0

votes

replies

4.0k

views

DESeq2 deseqdatasetfrommatrix r new version

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by megannj • 0

votes

replies

1.3k

views

deseq2 DESeqDataSetFromMatrix software error

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by nazaninhoseinkhan • 0

vote

replies

3.3k

views

deseq2 DESeqDataSetFromMatrix duplicate

updated 6.8 years ago by James W. MacDonald 67k • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

4.8k

views

deseq2 rnaseq featurecounts DESeqDataSetFromMatrix

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by bioinf ▴ 10

vote

replies

1.5k

views

deseq2 deseqdatasetfrommatrix deseqdataset

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by jillian.waters • 0

votes

replies

2.8k

views

rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport

7.2 years ago lirongrossmann ▴ 80

vote

replies

1.8k

views

deseq2 DESeqDataSetFromMatrix

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by zxy5139 • 0

votes

replies

9.1k

views

DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2

8.5 years ago ErickF ▴ 40

13 results • Page 1 of 1

Recent ...

Replies

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

Awards • All