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dese
•
reset
2
votes
2
replies
645
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
8 months ago
BioinfGuru
▴ 70
0
votes
1
reply
445
views
collapseReplicates dimension error
DESeq2
Dese
updated 13 months ago by
Michael Love
43k • written 13 months ago by
Léa
• 0
0
votes
3
replies
618
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 14 months ago by
Xu
• 0
0
votes
2
replies
638
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
15 months ago
pl23
• 0
0
votes
2
replies
945
views
Linear Model Fitting and Colinearity
dese
DESeq2
16 months ago
Hugo
• 0
0
votes
5
replies
1.2k
views
DESeq2 analysis
DESe
DESeq2
21 months ago
Adèle
• 0
0
votes
2
replies
2.1k
views
Handling NA's in Deseq2
Dese
DESeq2
23 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.9k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 23 months ago by
Michael Love
43k • written 24 months ago by
Alina
• 0
4
votes
5
replies
2.0k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 10 months ago by
ij283
• 0 • written 2.1 years ago by
Bernardo
▴ 10
3
votes
3
replies
1.2k
views
Merging two plated in R
dese
DESeq2
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.3k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.8k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.3 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.5 years ago
wilfried.guiblet
• 0
0
votes
2
replies
838
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
Dinesh
• 0
2
votes
3
replies
1.3k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
hpapoli
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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