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Comment: DESeq - help with pair wise comparisons
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bd2000
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Follow up question, is this the correct way to extract results?
```r
results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
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ktz
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Thank you for your reply! I would love to know your thoughts on the plots I've included above.
> 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
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ktz
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I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
Comment: DESeq - help with pair wise comparisons
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bd2000
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Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…
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Great - the approach with merging the atlases and using `block=` worked well!
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