Showing : delayedarray • reset
2
votes
3
replies
486
views
EBImage Rendering of a DelayedArray Object
DelayedArray EBImage cytomapper
updated 3 months ago by ★ 13k • written 3 months ago by ★ 1.5k
2
votes
5
replies
1.6k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 12 months ago by 42k • written 12 months ago by • 0
1
vote
6
replies
1.1k
views
DelayedArray::read_sparse_block
DelayedArray
updated 14 months ago by 16k • written 15 months ago by ▴ 10
0
votes
8
replies
1.6k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray TileDBArray
14 months ago sandmann.t ▴ 70
1
vote
5
replies
1.9k
views
rowsum or similar for RleArray?
delayedarray rowsum
written 7.2 years ago by ▴ 180
1
vote
1
reply
1.3k
views
Could not find function ".read_block_OLD"
DelayedArray S4Arrays
updated 18 months ago by 16k • written 18 months ago by • 0
2
votes
4
replies
2.3k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment S4Arrays DelayedArray
updated 17 months ago by 16k • written 18 months ago by ▴ 90
0
votes
1
reply
2.5k
views
DESeq2 in R 4.2.2
DESeq2 SummarizedExperiment DelayedArray
updated 22 months ago by ★ 4.5k • written 22 months ago by • 0
2
votes
3
replies
2.1k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array SingleCellExperiment DelayedArray
2.2 years ago merv ▴ 140
5
votes
1
reply
3.3k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array SingleCellExperiment DelayedArray
2.2 years ago merv ▴ 140
0
votes
0
replies
1.3k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array SingleCellExperiment DelayedArray
2.2 years ago merv ▴ 140
4
votes
13
replies
2.3k
views
Speeding up of DelayedArray::write_block()
HDF5Array DelayedArray
updated 13 months ago by 16k • written 3.2 years ago by ▴ 10
4
votes
3
replies
1.3k
views
Temporal directory setting for DelayedArray
HDF5Array DelayedArray
3.4 years ago Koki ▴ 10
2
votes
3
replies
1.3k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64 HDF5Array DelayedArray
updated 3.4 years ago by 16k • written 3.5 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array DelayedArray
updated 3.4 years ago by 16k • written 3.5 years ago by ▴ 40
0
votes
1
reply
896
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
3.5 years ago Koki ▴ 10
0
votes
1
reply
1.0k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
3.5 years ago Koki ▴ 10
9
votes
8
replies
1.8k
views
Processing time of blockApply and DelayedArray
DelayedArray HDF5Array
updated 3.5 years ago by 16k • written 3.5 years ago by ▴ 40
2
votes
4
replies
1.3k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array DelayedArray
3.5 years ago Koki ▴ 10
1
vote
2
replies
1.3k
views
Error: C stack usage of HDF5Array
DelayedArray HDF5Array
3.6 years ago Koki ▴ 10
2
votes
6
replies
1.7k
views
"dim<-" against on-disk arrays
DelayedArray TileDBArray HDF5Array
updated 3.5 years ago by 16k • written 3.6 years ago by ▴ 10
1
vote
1
reply
2.3k
views
Problem installing DelayedArray
DelayedArray
updated 3.8 years ago by 16k • written 3.8 years ago by ★ 8.2k
11
votes
5
replies
1.3k
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 4.2 years ago by 67k • written 4.2 years ago by ▴ 600
2
votes
8
replies
3.0k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray warning installation
updated 4.4 years ago by 16k • written 4.4 years ago by ▴ 10
1
vote
3
replies
1.9k
views
Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ▴ 170
2
votes
1
reply
1.3k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater BiocSingular DelayedArray
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ▴ 350
4
votes
3
replies
1.3k
views
Best way of creating a large RleMatrix
DelayedArray RleMatrix
updated 5.9 years ago by 16k • written 6.0 years ago by ▴ 180
8
votes
8
replies
1.9k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ▴ 180
0
votes
1
reply
1.3k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 6.3 years ago by 25k • written 6.4 years ago by • 0
0
votes
1
reply
2.0k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
6.3 years ago cristoforo-grasso • 0
2
votes
2
replies
1.4k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 6.7 years ago by ▴ 740 • written 6.7 years ago by ★ 1.3k
7
votes
4
replies
1.8k
views
From RleList to RleArray
delayedarray rlelist rle
updated 7.1 years ago by ▴ 740 • written 7.1 years ago by ▴ 980
2
votes
6
replies
1.7k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 180
4
votes
4
replies
1.6k
views
remove NA's from a DelayedArray
delayedarray
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 180
0
votes
1
reply
1.5k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package dmrfinder delayedarray combine
7.4 years ago br • 0
1
vote
6
replies
1.9k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 7.4 years ago by ▴ 740 • written 7.4 years ago by ★ 1.9k
3
votes
8
replies
3.4k
views
Tutorial: "developing" with HDF5Array
hdf5 DelayedArray summarizedexperiment Tutorial
7.8 years ago Vincent J. Carey, Jr. 6.7k
37 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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