Bioconductor Decidetests

Showing : decidetests • reset

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851

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decideTests topTable limma

updated 12 months ago by Gordon Smyth 51k • written 12 months ago by Anna ▴ 20

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677

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edgeR voom decidetests DEG

updated 15 months ago by Gordon Smyth 51k • written 15 months ago by Ankita • 0

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1.3k

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limma eBayes decideTests topTable

updated 4.4 years ago by Gordon Smyth 51k • written 4.4 years ago by irene.roman • 0

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1.3k

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limma stageR decideTests

updated 5.5 years ago by Koen Van den Berge ▴ 180 • written 5.5 years ago by maltethodberg ▴ 180

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803

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limma decidetests

updated 5.7 years ago by Gordon Smyth 51k • written 5.7 years ago by Ryan C. Thompson ★ 7.9k

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1.5k

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limma anova decidetests

updated 5.8 years ago by Gordon Smyth 51k • written 5.8 years ago by mikhael.manurung ▴ 280

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1.3k

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limma decidetests

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by jamie.gearing ▴ 60

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1.0k

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limma decidetests

updated 7.7 years ago by Gordon Smyth 51k • written 7.7 years ago by ahmed.asadik • 0

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1.7k

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limma decidetests

updated 7.8 years ago by Axel Klenk ★ 1.0k • written 7.8 years ago by bi_Scholar • 0

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1.3k

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limma decidetests methylation

updated 8.3 years ago by Sean Davis 21k • written 8.3 years ago by kraiczy ▴ 10

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3.2k

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rnaseq decideTests limma qvalue

9.1 years ago anver • 0

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5.1k

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limma B stats decideTests

updated 23 months ago by krushnach80 • 0 • written 9.2 years ago by Elsa • 0

12 results • Page 1 of 1

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

Votes

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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