Bioconductor Debrowser

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debrowser

updated 3.7 years ago by adaoka4 • 0 • written 5.2 years ago by 15040356701 • 0

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updated 3.7 years ago by adaoka4 • 0 • written 5.2 years ago by 15040356701 • 0

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DEBrowser shiny

5.9 years ago tomasfly • 0

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7.6 years ago alper.kucukural ▴ 10

4 results • Page 1 of 1

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Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…

Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k

No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…

Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

Comment: DESeq2 - Comparing Comparisons by James W. MacDonald 67k

Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…

Votes

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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