Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
deanalysis
•
reset
3
votes
3
replies
2.3k
views
Differential expression analysis with only FPKM matrix available from total newbie in R
FPKM
RNASeqData
DEAnalysis
limma
14 months ago
Ethan Nguyen
• 0
2
votes
10
replies
1.5k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR
deanalysis
test fisher exact
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
thkapell
▴ 10
0
votes
0
replies
1.5k
views
Specific considerations in RNA-Seq DE analysis with edgeR pipeline for a TCGA dataset starting with HTSeq counts
edgeR
rnaseq
DEanalysis
TCGA
independent filtering
7.0 years ago
svlachavas
▴ 830
3 results • Page
1 of 1
Recent ...
Replies
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Awards
• All
Popular Question
to
mhem
▴ 10
Popular Question
to
Anna
▴ 20
Scholar
to
Haibo Liu
▴ 20
Popular Question
to
Talip
▴ 10
Popular Question
to
alexandre.blais
▴ 50
Locations
• All
WEHI, Melbourne, Australia,
15 minutes ago
Germany,
32 minutes ago
Türkiye,
54 minutes ago
France,
1 hour ago
Denmark,
1 hour ago
Traffic: 633 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6