Bioconductor David

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DAVID

updated 3.5 years ago by shepherl 4.1k • written 3.5 years ago by deepue ▴ 10

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rdavidwebservice david

6.6 years ago rdalbanus • 0

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rdavidwebservice david

updated 6.6 years ago by gevermalc • 0 • written 9.6 years ago by Vivek.b ▴ 100

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microarray david differential gene expression GO

6.9 years ago seendey16 • 0

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pathway analysis over-representation analysis DAVID pantherDB consensuspathDB

8.2 years ago smt8n • 0

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RDAVIDWebService david

8.6 years ago umut.caglar ▴ 10

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software error david rdavidwebservice

updated 9.5 years ago by oops324 • 0 • written 9.9 years ago by TriS ▴ 200

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rdavidwebservice david differential gene expression annotation

updated 10.1 years ago by Dan Tenenbaum ★ 8.2k • written 10.1 years ago by hpw9 • 0

8 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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