Bioconductor David

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DAVID

updated 3.2 years ago by shepherl 4.1k • written 3.2 years ago by deepue ▴ 10

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rdavidwebservice david

6.3 years ago rdalbanus • 0

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rdavidwebservice david

updated 6.3 years ago by gevermalc • 0 • written 9.3 years ago by Vivek.b ▴ 100

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microarray david differential gene expression GO

6.7 years ago seendey16 • 0

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pathway analysis over-representation analysis DAVID pantherDB consensuspathDB

7.9 years ago smt8n • 0

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RDAVIDWebService david

8.3 years ago umut.caglar ▴ 10

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software error david rdavidwebservice

updated 9.2 years ago by oops324 • 0 • written 9.7 years ago by TriS ▴ 200

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rdavidwebservice david differential gene expression annotation

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by hpw9 • 0

8 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k