Showing : dataframe • reset
11
votes
17
replies
3.0k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 2.2 years ago by ▴ 20 • written 2.2 years ago by ▴ 30
1
vote
3
replies
1.6k
views
Extract specific portion of a string and paste to a new column in R
Rscript tidyr dataframe tidyverse offtopic
updated 2.5 years ago by 700 • written 2.5 years ago by • 0
1
vote
0
replies
2.4k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list save dataframe
updated 2.6 years ago by 4.1k • written 2.6 years ago by ▴ 10
0
votes
1
reply
825
views
How to insert a qvalues column in a dataframe with pvalues in R
qvalues dataframe
updated 3.0 years ago by 52k • written 3.0 years ago by • 0
1
vote
4
replies
3.3k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
5.1 years ago jason.williams ▴ 10
1
vote
1
reply
999
views
Checking if to DataFrames are identical
S4Vectors DataFrame
5.4 years ago maltethodberg ▴ 180
5
votes
2
replies
1.2k
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.8 years ago by ★ 11k • written 5.8 years ago by 1.6k
2
votes
2
replies
1.3k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4 dataframe left_join merge
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 90
1
vote
5
replies
1.8k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2 dataframe pasilla
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 30
0
votes
2
replies
1.5k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 6.0 years ago by 16k • written 6.1 years ago by • 0
1
vote
2
replies
1.4k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.3 years ago by ★ 11k • written 6.3 years ago by ▴ 60
0
votes
5
replies
5.0k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich granges distancetonearest function dataframe
7.2 years ago rbronste ▴ 60
6
votes
6
replies
6.8k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ★ 1.5k
0
votes
2
replies
1.4k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
7.4 years ago mictadlo ▴ 10
3
votes
2
replies
1.6k
views
matrix as a column of mcols of GRanges would not be extracted correctly by lapply
mcols DataFrame GRanges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ▴ 30
2
votes
4
replies
1.7k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 19 months ago by 16k • written 7.7 years ago by ▴ 180
4
votes
10
replies
2.6k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 70
2
votes
2
replies
1.3k
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 8.2 years ago by ▴ 80 • written 8.2 years ago by • 0
2
votes
2
replies
1.4k
views
getting global Fisher score for overlap of 3 GRanges object by element-wise [solved]
r DataFrame fisher-method
8.6 years ago Jurat Shahidin ▴ 80
0
votes
0
replies
878
views
Error in TopologyGSA
topologyGSA dataframe
8.7 years ago saamar.rajput • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.2 years ago TimothéeFlutre ▴ 80
21 results • Page 1 of 1
Recent ...
Replies
Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k
I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105
Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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