Bioconductor Database

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protein database glutathionylation PTM

3.5 years ago Camelia • 0

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3.6k

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MassSpectrometryData Proteome Database DEP

3.8 years ago tpm • 0

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597

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database

5.3 years ago jsdh120707 • 0

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1.2k

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rnaseq next-generation sequencing database Job

7.1 years ago cleo.k.yang • 0

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1.6k

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annotationforge error database

updated 8.4 years ago by Guido Hooiveld ★ 4.1k • written 8.4 years ago by kritikamish99 ▴ 10

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1.0k

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bioseqclass pssm database featurepssm feature

9.2 years ago greensandag • 0

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1.3k

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biomaRT database

updated 9.9 years ago by Julian Gehring ★ 1.3k • written 9.9 years ago by aspadotto ▴ 20

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40