updated 7.7 years ago by
Dario Strbenac
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Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
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4.7k
Yes, perfectly valid. Analyzing counts from high-throughput experiments with DESeq2 (or edgeR, or limma) is standard. After all, what DiffB…
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴
110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
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0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1]
add the following to the `.Rprofile` and `Rprofile.site`
# fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table
by
shepherl
4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
shepherl
4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
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