15 months ago
rohitsatyam102
▴
20
0
votes
1
reply
883
views
Recent ...
Replies
Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
by
kahunroleh
•
0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Martijn
•
0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
•
0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
by
James W. MacDonald
67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
jodan
•
0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Votes
Awards
• All
Popular Question to
adam_casas
•
0
Popular Question to
shepherl
4.1k
Teacher to
Axel Klenk
★
1.1k
Popular Question to
Gordon Smyth
52k
Locations
• All
South Korea, 15 minutes ago
Hong Kong, 26 minutes ago
Australia, 35 minutes ago
India, 44 minutes ago
Spain, 57 minutes ago
South Korea, 15 minutes ago
Hong Kong, 26 minutes ago
Australia, 35 minutes ago
India, 44 minutes ago
Spain, 57 minutes ago
Traffic: 522 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6