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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
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It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
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Andre
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Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
Comment: PCA of different bacterial species
by
Jeremy
•
0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error?
by
Urotree
•
0
pheno <- rnb.set.arrays@pheno # Phenotypic data
sites <- rnb.set.arrays@sites # CpG site definitions (data.frame)
meth <- rnb.set…
Comment: RnBeads::combine() - error?
by
Urotree
•
0
![enter image description here][1]
[1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6
Hi, after I convert to RnBiseqSet, it shows "All…
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