Bioconductor Cydar

Showing : cydar • reset

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775

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cydar

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by thkapell ▴ 10

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2.0k

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Cydar CyTOF normalization

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.3k

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cydar mass cytometry

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by kenneth.baker • 0

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1.8k

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Cydar normalization normalizeBatch

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Florent ▴ 10

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1.1k

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cydar CyTOF

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mikhael.manurung ▴ 280

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971

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cydar

7.5 years ago Lukas Weber • 0

6 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

Awards • All

Teacher to dsull ▴ 40