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cydar
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
thkapell
▴ 10
1
vote
6
replies
1.9k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
ghogg
• 0
0
votes
4
replies
1.3k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
kenneth.baker
• 0
2
votes
8
replies
1.7k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
Florent
▴ 10
2
votes
4
replies
1.1k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
mikhael.manurung
▴ 280
1
vote
2
replies
958
views
cydar: negative values for cell assignment indices
cydar
7.4 years ago
Lukas Weber
• 0
6 results • Page
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Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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